Listar por autor "Seoane, Pedro"
Mostrando ítems 1-8 de 8
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A workflow with dedicated tools for preparing reference transcriptomes from non-model organisms has evidenced important biological information
Claros-Díaz, Manuel Gonzalo
; Benzekri, Hicham; Seoane, Pedro; Carmona Muñoz, Rosario Maria; Bautista-Moreno, Rocío; Guerrero-Fernández, Darío; Fernández-Pozo, Noé[et al.] (2014-10-01)
Construction transcriptomes of non-model organisms is a common task nowadays due to the advent of low-cost sequencing platforms. The non-model organisms require a de novo assembling strategy since no reference is available. ... -
An improved de novo assembling and polishing of Solea senegalensis transcriptome shed light on retinoic acid signalling in larvae
(Scientific Reports (Springer Nature), 2020)Senegalese sole is an economically important species in aquaculture and a model to decipher the severe transformations occurring during flatfish metamorphosis. A robust sole transcriptome was envisaged from a total of 96 ... -
De novo analysis of the haustorial transcriptome of the cucurbit powdery mildew fungus Podosphaera xanthii reveals new candidate secreted effector proteins
Polonio Escalona, Alvaro Acisclo; Seoane, Pedro; De-Vicente-Moreno, Antonio; Pérez-García, Alejandro (2017-07-20)
Backgrounds. Cucurbit crops are affected, among other pathogens, by the obligate biotrophic fungus Podosphaera xanthii, the main causal agent of powdery mildew in cucurbits. This fungus develops a specialized structure of ... -
Detection of transposons modifying genome background in probiotics
Aguilera-Cobos, Lorena; Seoane, Pedro; Gonzalo Claros, M.; Moriñigo-Gutiérrez, Miguel Ángel; Balebona-Accino, María del Carmen; Núñez-Serrano, Rafael; Córdoba Caballero, José; Tapia-Paniagua, Silvana Teresa[et al.] (2018-12-10)
The study of probiotic microorganisms is very interesting in the aquaculture field. Administration of live microorganisms in adequate amounts confers some benefits to the host (Kechagia et al. 2013). Even if Shewanella ... -
Regulatory variants: from detection to predicting impact.
(Oxford Academic, 2018-06-08)Variants within non-coding genomic regions can greatly affect disease. In recent years, increasing focus has been given to these variants, and how they can alter regulatory elements, such as enhancers, transcription factor ... -
Shewanella putrefaciens Fish pathogenic strains contain plasmids that are absent in the probiotic strain s. Putrefaciens pdp11
Pérez-Gómez, Olivia; Domínguez-Maqueda, Marta; Grande-Pérez, Ana; Esteve, Consuelo; Seoane, Pedro; Tapia-Paniagua, Silvana Teresa; Balebona-Accino, María del Carmen; Moriñigo-Gutiérrez, Miguel Ángel[et al.] (Aquaculture europe congress, 2022)
Probiotics are live microorganisms that confer a health benefit to the host when administered in adequate amounts. Shewanella putrefaciens Pdp11 has been described as a probiotic for farmed fish species such as Solea ... -
Sppdp11 administration in diet modified the transcriptomic response and its microbiota associated in mechanically induced wound Sparus aurata skin.
Cerezo Ortega, Isabel M.; Pérez-Gómez, Olivia; Bautista-Moreno, Rocío; Seoane, Pedro; Esteban-Abad, María Ángeles (IOAP-MDPI, 2023-01-04)
Skin lesions are a frequent fact associated with intensive conditions affecting farmed fish. Knowing that the use of probiotics can improve fish skin health, SpPdp11 dietary administration has demonstrated beneficial ... -
TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms
Claros-Díaz, Manuel Gonzalo; Seoane, Pedro; Espigares, Marina; Carmona, Rosario; Polonio, Álvaro; Quintana, Julia; Cretazzo, Enrico; Bota, Josefina; Pérez-García, Alejandro; Alché, Juan de Dios; Gómez, Luis[et al.] (BMC Bioinformatics, 2018)
The advances in high-throughput sequencing technologies are allowing more and more de novo assembling of transcriptomes from many new organisms. Some degree of automation and evaluation is required to warrant reproducibility, ...